| Fecha 2 | A la Fecha 2 | |||||||||
| GRAND PRIX OF JAPAN | World Championship | |||||||||
| Pos. | Rider | Nation | Team | Total time | Pos. | Rider | Nation | Team | Points | |
| 1 | A. IANNONE | ITA | Ongetta Team I.S.P.A. | 42'23.716 | 1 | Andrea IANNONE | ITA | Ongetta Team I.S.P.A. | 37.5 | |
| 2 | J. SIMON | SPA | Bancaja Aspar Team 125cc | 1.346 | 2 | Julian SIMON | SPA | Bancaja Aspar Team 125cc | 30 | |
| 3 | P. ESPARGARO | SPA | Derbi Racing Team | 5.039 | 3 | Pol ESPARGARO | SPA | Derbi Racing Team | 22.5 | |
| 4 | S. BRADL | GER | Viessmann Kiefer Racing | 6.904 | 4 | Sandro CORTESE | GER | Ajo Interwetten | 18 | |
| 5 | M. MARQUEZ | SPA | Red Bull KTM Motosport | 13.061 | 5 | Stefan BRADL | GER | Viessmann Kiefer Racing | 17 | |
| 6 | S. CORTESE | GER | Ajo Interwetten | 14.841 | 6 | Jonas FOLGER | GER | Ongetta Team I.S.P.A. | 13 | |
| 7 | J. OLIVE | SPA | Derbi Racing Team | 16.42 | 7 | Bradley SMITH | GBR | Bancaja Aspar Team 125cc | 11.5 | |
| 8 | J. FOLGER | GER | Ongetta Team I.S.P.A. | 16.483 | 8 | Marc MARQUEZ | SPA | Red Bull KTM Motosport | 11 | |
| 9 | D. AEGERTER | SWI | Ajo Interwetten | 27.5 | 9 | Dominique AEGERTER | SWI | Ajo Interwetten | 9.5 | |
| 10 | B. SMITH | GBR | Bancaja Aspar Team 125cc | 30.359 | 10 | Joan OLIVE | SPA | Derbi Racing Team | 9 | |
| 11 | D. WEBB | GBR | Degraaf Grand Prix | 37.547 | 11 | Danny WEBB | GBR | Degraaf Grand Prix | 8.5 | |
| 12 | T. KOYAMA | JPN | Loncin Racing | 43.856 | 12 | Esteve RABAT | SPA | Blusens Aprilia | 6 | |
| 13 | E. RABAT | SPA | Blusens Aprilia | 59.889 | 13 | Nicolas TEROL | SPA | Jack & Jones Team | 4.5 | |
| 14 | L. ZANETTI | ITA | Ongetta Team I.S.P.A. | + 1'00.141 | 14 | Tomoyoshi KOYAMA | JPN | Loncin Racing | 4 | |
| 15 | S. CORSI | ITA | Jack & Jones Team | + 1'02.601 | 15 | Lorenzo ZANETTI | ITA | Ongetta Team I.S.P.A. | 2 | |
| 16 | C. BEAUBIER | USA | Red Bull KTM Motosport | + 1'02.609 | ||||||
| 17 | N. TEROL | SPA | Jack & Jones Team | + 1'09.867 | ||||||
| 18 | R. KRUMMENACHER | SWI | Degraaf Grand Prix | + 1'09.883 | ||||||
| 19 | S. GADEA | SPA | Bancaja Aspar Team 125cc | + 1'15.049 | ||||||
| 20 | T. NAKAGAMI | JPN | Ongetta Team I.S.P.A. | + 1'19.858 | ||||||
| 21 | A. MASBOU | FRA | Loncin Racing | + 1'43.413 | ||||||
| 22 | E. VAZQUEZ | SPA | Derbi Racing Team | + 1'52.910 | ||||||
| 23 | L. SEMBERA | CZE | Matteoni Racing | + 2'07.124 | ||||||
| 24 | Y. YANAGISAWA | JPN | 18 Grage Racing | + 2'07.402 | ||||||
| 25 | L. MARCONI | ITA | CBC Corse | 1 Lap | ||||||
| 26 | L. VITALI | ITA | CBC Corse | 1 Lap | ||||||
| 27 | H. IWATA | JPN | Dydo Miu Racing | 1 Lap | ||||||
| 28 | S. KAMADA | JPN | Endurance & Osl | 1 Lap | ||||||